Hi Bruce
Thanks for your reply. Well, two of my subjects have this problem. I have two subjects with correct flattened maps and for 3 other subjects "the mris_flatten" is still running. I attached the directory and I would appreciate if you could please take a look.
Thanks MOna
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Friday, November 8, 2019 11:54 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] flat maps in native space
Hi Mona
that is pretty strange looking. Is the data somewhere local that we can take a look at it? I would guess that one of the cuts left a connection around, but would need to look at it to tell. Have you flattened other subjects successfully?
cheers Bruce
On Fri, 8 Nov 2019, Nasiriavanaki, Zahra wrote:
Hi Freesurfer experts
I was trying to make flat maps for individual subjects, following instruction in https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOccipitalFlattenedPatch. For some of my subjects, the flat maps are distorted (attached image). Please let me know what you think.
Thanks Mona
[IMAGE]
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129