Hi Hengameh,
It looks like you missed '-all' option at the end.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of hmarzban@student.ubc.ca Sent: Monday, April 3, 2023 5:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Issue with running recon-all on Synthsr output
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Dear developers,
I recently ran Synthsr on one of my images and now I am attempting to run recon-all.
The output states that it finished without any errors in just 0.006 hours, but I am unable to proceed with the processing.
Have any of you encountered this issue before? I would greatly appreciate your recommendations on how to proceed.
(I am confident that there are no issues with the Freesurfer version and recon-all, as I have successfully run a 3T MP-RAGE image)
Thank you
Hengameh