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Martin,
That is the point. I have edited the hippocampus in the -long 2 times and the recon does not maintain my edits.
I would love any help to changes I should be making to my recon statement to maintain my edits.
Rebecca
Hi Rebecca,
aseg edits to subcortical structures need to be done in the -long stage. (see here: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits ) Best, Martin
On Thu, 2018-09-06 at 14:37 -0700, Rebecca Ray wrote:
External Email - Use Caution
*>* HELP *>* ---------- Forwarded message ---------- *>* From: Rebecca Ray <rayr5 at gene.com https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> *>* Date: Thu, Sep 6, 2018 at 12:05 PM *>* Subject: longitudinal hippocampal aseg editing *>* To: freesurfer at nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer *> > >* I have 2 time points on 60 subjects with most being in some form of *>* AD. There are considerable differences in hippocampal volume between *>* time points. I edited the raw images before making the template. I *>* then had to edit the aseg template image and there were still *>* problems on the -long images. I tried to edit and rerun autorecon2- *>* noaseg and autorecon3 and it does not appear to be keeping my edits. *> >* What am I doing wrong? *> >* Rebecca *> >* _______________*