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Hi
This is Vishal Mohanty, a Research Assistant at the CNS Labhttps://secure-web.cisco.com/15W4gGDirofYO8-hxBJZzt-0Z-M9nlsafkwxgoE1yBXcR-yRlpi4hSdJy1Rmabv3CgdHVnnVbW4HOgzr58sGmHpdvzKHyuauJORmQfXplg2hzvu1LZTBlXu1II7iZPKUsfRW5vvjtsnhq_IOlApnYs9tUrlKIiLbP-0WMhESr5HmRsaK9Cyt8rXS2kYTvEZHd4SjHX6RDQgV1VdJ9jPs6wlF9addGZ8LDyTmipJ62kaLJ_B_Li-7hzloE_jMFxWqCL0NOe8EXqFqxqqXru4g33l5sqh0KfC1XOWLinkm65w_S0SRbJB3IriH8nP34c3-y/https%3A%2F%2Fcnslab.stanford.edu%2F at Stanford which is headed by Prof. Kilian Pohlhttp://secure-web.cisco.com/1SZ4eEoYf_E7omrj4INdi5GjmRCw5BV-qQfn2PUzBkhAmhzg9o1EOsGNK10NZRw5SfnL5bJkYZTQTHkzenh--uXslAATvtFTmJ7NjUOLDiJgSRVSzTnG2joPBK5ngvrDs2nDg10edlZPsdBg8V2evhOrlAj3Q8Y5a0Icw4wH7DIGgCTlSngFLkK8lmTLGTZYNpQgHETNcLNfQRaksY2HB0VRu5tPFk6EkeR6apvPAEghUfHILOUPInGPn3UEANagA637xp9HAtEEnxJ5HWTuwmBKT9wxePBfm6qL0NgWGhNIu2oUNzc8odvM5B4ZVmJgU/http%3A%2F%2Fcnslab.stanford.edu%2Fpersonal%2Fkilian-pohl.html. We are running Freesurfer commands for processing of our MRI data on Sherlockhttps://secure-web.cisco.com/1ELFOu5r8C0zuhwJthCGAIpaL-g9geTHv3j06pTTPK06DKUjl_FsABCbwv_YEB4NiLvPf5WaIymCbVGgy_N3zr1m0bbHiNHuZq1bQLIxhcthpMYEvxKVOI7F4PKk__J43FiQjajODDvS-plsHLwSjaI2vOA4RHGzU8KzuWGfhUG79R_7PEQjfaRe-fzF4cN41C4kadb7hcxPD6pusNG3Ciuq5HM_UH1n1HzwAtyKIDAB4f4PynteNw0qdQAIRDg7Ha_-vHwFAnwduc3MwdAT0tmsVCxmifNpM3GnYRbr4YMi-9wBCy1llPqh_XXxN3OlV/https%3A%2F%2Fwww.sherlock.stanford.edu%2F which is the HPC cluster at Stanford. We are seeing some errors in running mri_gcut of the type:
CREATE LAB_S01450/standard/20161207_2762_12072016/structural/original/stripped/voting/gcut_t1b_brain.nii.gz
========================================================================
error: No such file or directory
error: Could not set locale^@
I'm attaching the full log file. Could you please help me understand what's the issue and how to fix it. Do let me know what other information would be needed from my end.
Thanks and Regards
Vishal Mohanty MS CS Candidate (2023) Stanford University