Dear Doug, no, I did not put it in quotes. I just typed the mentioned command, but it is still not working. I can not find the file comprising the thickness, area or folding values at peak maxima after Monte Carlo simulation. Sorry for asking so many questions, but it is still not working. What should I do next? Best regards, DH
Date: Thu, 13 Mar 2014 15:15:23 -0400 From: greve@nmr.mgh.harvard.edu To: dusanhirjak@hotmail.com; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracting thickness, area and folding values from Qdec
are you puttting it in quotes? If so, don't doug
On 03/13/2014 01:46 PM, Dusan Hirjak wrote:
Dear Doug,
I typed 1.3 but it is still not working.
Any other ideas???
Thanks for your help.
DH
Date: Thu, 13 Mar 2014 12:20:57 -0400 From: greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracting thickness, area and folding
values from Qdec
Use 1.3 not 1,3
doug On 03/13/2014 10:12 AM, Dusan Hirjak wrote:
Dear Freesurfer Experts,
I did a correlational analysis in qdec and found several significant clusters after Monte-Carlo simulation (0.05). Now, I would like to extract the mean cortical thickness, area and folding values (peak maximum) of each study subject above the significant cluster.
I tried to run "mri_glmfit-sim --glmdir mc-z.neg.th13.pdf.dat --cache "1,3" --sim-sign neg"
However, I got the ERROR: thresh = 1.3 not completely converted
What am I doing wrong? Any other ideas?
Is the pdf.dat file the right one to use???
Thanks!
DH
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