Hi Saurabh
those are eye sockets not brain. If the surfaces don't include them then don't worry about them.
cheers Bruce On Thu, 20 Mar 2014, Saurabh Thakur wrote:
Hello Freesurfer expert ,
I am sending you the image of brain.mgz screen-shot.
Is the area highlighted is part of cortex or it is due to skull stripping error.
Please clarify.
Thanks in advance,
cheers Saurabh Thakur,