It might be that the wm.mgz file is corrupted. What happens if you run mri_info wm.mgz
On 4/18/2022 8:02 PM, HYE JUNG YOUN wrote:
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Hi Bruce,
Do you mean that I should re-do the recon-all process?
I tried to re run freeview but it did not work. And Yes I think the files have been overwritten at some point which I am trying to figure out to avoid making the same mistake in the future.
However, the question is I have done the exact same process I always did to view mri files on freeview. I have set and used the same subject directory, used the same code, and etc.
Here’s the code I used:
Which gives me this:
Then, when I check mri folder, notice the selected files have been overwritten (I think) and are shown as 0 byte in size.
Can you see where I went wrong to overwrite those files?
Thank you for your help.
Best, H
*From:*freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Fischl, Bruce *Sent:* Monday, April 18, 2022 10:35 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Failed to load MRI error
Is this for a subject that you can’t load the wm.mgz for? It doesn’t show any errors. Is the wm.mgz zero length? I don’t see how those things can both be true unless you overwrote it at some point. If you haven’t manually edited this subject maybe you should just rerun it?
*From:*freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *HYE JUNG YOUN *Sent:* Monday, April 18, 2022 2:44 AM *To:* 'Freesurfer support list' freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Failed to load MRI error
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Hi Bruce,
Please find the attached log file.
Thanks.
H
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