Try removing the trailing slash from the subject name, ie, 10100_S2654UFQ, not 10100_S2654UFQ/
On 5/26/2021 1:18 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
Hi all,
I am trying to extract LGI measures as prescribed in *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/LGI https://secure-web.cisco.com/17RNO0jXsWejJpXwwC1TbKXfwLIWB9IY53g1Ab5f3XjIUVS7ug_ENRyR0oKEd3p89IXZY-0SVCOfgci40rJTREeScHc-jgAjDUkzFxtfqiD1PG-T53a5a2jtNNhX-pzy98TWJjaRFSXoAY0eamt-BSbzcW4n31uTbXw1lmQPhFIQowFXuB4U5E5RsaZxMFnXlPzziFzOLEqlArwrmXrRdRBHr7ySldrVsrNhm3cPDJw2hSEmh8E8p77BGwsNtn0ZBQ1WnpjLa119Ai7GlK0-okg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLGI
So I follow this:
mri_segstats --annot my_subject_id lh aparc --i $SUBJECTS_DIR/my_subject_id/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats
but receive this error (I have also tried in root):
7.1.0 cwd cmdline mri_segstats --annot 10100_S2654UFQ/ lh aparc --i /mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats sysname Linux hostname Alpha machine x86_64 user victor whitesurfname white UseRobust 0 Constructing seg from annotation
Reading annotation /mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ//label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 1000 error: No such file or directory error: CTABwriteFileASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab): could not open for writing
error: No such file or directory error: CTABreadASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab): could not open file ERROR: reading /tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab
Is this something that I can fix?
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab --
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