Hi all - I am trying to run the reconchecker program to get some QA done on my data and I get the below error. Any help on this would be greatly appreciated!
Also are there any other QA programs that would enable me to easily visualize the outputs at various stages of Freesurfer recon-all?
****************************** Running recon_checker on: Thu Mar 10 17:17:23 EST 2011 Checking Last Version Used: /usr/analysis/bin/freesurfer/bin/recon-all Checking ALL Versions Used: /home/virtualuser/apps/freesurfer/bin/recon-all, /usr/analysis/bin/freesurfer/bin/recon-all, --- checking output files ... Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker -subjid Dykens_2250_3_1_freesurfer --- /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker: Command not found. /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_output_file_checker: Command not found. --- checking step order ... Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker -subjid Dykens_2250_3_1_freesurfer --- /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker: Command not found. /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/recon_all_status_log_checker: Command not found. --- *making snapshots ...* *Running command: /autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/jlp_snapshots3.csh -subjid Dykens_2250_3_1_freesurfer -o QA.html* *---* */autofs/space/tensor_017/users/jpacheco/QAtools/data_checker/jlp_snapshots3.csh: Command not found.*