Hi Franesco
can you post an image of the scan you are trying to run through recon-all? And give us some idea of what it is (resolution, etc...)? Something is badly wrong if they are all failing. You can also upload the orig.mgz of one of them and we will take a look if you want.
cheers Bruce
On Thu, 7 Aug 2014, Francesco Deleo wrote:
Thank you Doug!but i tried it in many cases but I've always received the same error message... Is there something else I can try?
Francesco
2014-08-07 0:46 GMT+02:00 Douglas N Greve greve@nmr.mgh.harvard.edu: Try it with -notal-check doug
On 08/06/2014 04:39 PM, Francesco Deleo wrote: > I all! > > I am a new freesurfer user. > I have a problem when I perform the recon-all -all, in about 15% of > MRI scans, all made with the same scanning protocol (T1 MPRAGE in a > SIEMENS Avanto 1,5 T). > > I can't recognize any difference between those scans which work > correctly and those not. > I have never found the same error on 3T MRI scans. > > I've already tried to add these flags to the recon-all -all command: > -use-mritotal > -talairach -use-mritotal > -notalairach > but I've always received an error message > > Thank you very much > > ERROR: mpr2mni305 failed, see transforms/talairach_avi.log > Darwin pro-di-villani.besta.local 13.3.0 Darwin Kernel Version 13.3.0: > Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 > > Thanks very much for your attention > > Francesco > Milan, Italy > > --------------------------------------------------------------------- > > FREESURFER_HOME: /Applications/freesurfer > > Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 > > Kernel info: Darwin 13.3.0 x86_64 > > --------------------------------------------------------------------- > > > LAST LINES IN TALAIRACH_AVI.LOG > > parameters > 9.0270 134.9373 110.8627 -84.3566 -7.5458 -11.3475 > eta,q 0.95791 3.72402 > 0.0485 0.0470 0.0477 0.0513 0.0470 0.0452 > 0.0475 0.0471 0.0478 0.0513 0.0457 0.0435 > 0.0472 0.0472 0.0476 0.0428 0.0434 0.0415 > 0.0471 0.0471 0.0476 0.0435 0.0430 0.0415 > 0.0470 0.0478 0.0457 0.0525 0.0415 0.0430 > 0.0473 0.0511 0.0430 0.0548 0.0442 0.0453 > 0.0486 0.0426 0.0406 0.0672 0.0431 0.0503 > niter,ni,del,rscale 7 3 12.0000 1.2000 > imgrege: no voxels in register > ERROR: 'imgreg_4dfp > /Applications/freesurfer/average/711-2C_as_mni_average_305 > /Applications/freesurfer/average/711-2B_as_mni_average_305_mask > talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283' > failed! status=254 > ERROR: mpr2mni305 execution aborted > >
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