Hi Martin,
We run all cross, base and long with 5.3. I guess the problem maybe we run cross on a computer and then copy the results to another computer to run the cross and long. the "*fsaverage" is not copied. Does this matter？*
Best，
Jinsong
On Wed, Jul 20, 2016 at 12:21 AM, Martin Reuter <mreuter@nmr.mgh.harvard.edu
wrote:
Hi Jinsong,
I have never seen this. Stable 5.3 is very stable and I doubt it is a bug. How did you process base and cross sectionals? Also with 5.3 ?
I would recommend to process cross and base with 5.3, then re-run the long and see if you can replicate this problem. Let me know what happens.
Best, Martin
On Jul 20, 2016, at 12:48 AM, Jinsong Tang tangjinsonghn@gmail.com
wrote:
Hi all,
I found an error during the longitudinal -long stream:
recon-all -long P1001-2 P1001 -all ......
FREESURFER_HOME /space/raid/fmri/freesurfer Actual FREESURFER_HOME /space/raid/fmri/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC
2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux
......
mris_spherical_average -erode 1 -orig white -t 0.4 -o P1001-2.long.P1001
label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label
painting output onto subject P1001-2.long.P1001. processing subject lh.EC_average...
MRISread(/space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg): could not open file
eroding label 1 times before writing thresholding label stat at 0.400 before writing Not a directory mris_spherical_average: could not read surface file
/space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg
Not a directory Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC
2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux
recon-all -s P1001-2.long.P1001 exited with ERRORS at Fri Jul 8
21:33:02 PDT 2016
Please help me fix this error!
Thanks and best regards,
Jinsong
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