Re: [Freesurfer] ScLimbic issue

External Email - Use Caution

Hi, I have indeed the same outputs. Here is the output of the below commands:

[schopenhauer:LC_HYP] (nmr-dev-env) which mri_sclimbic_seg /usr/local/freesurfer/7.4.1/bin/mri_sclimbic_seg

[schopenhauer:LC_HYP] (nmr-dev-env) which fspython /usr/local/freesurfer/7.4.1/bin/fspython

[schopenhauer:LC_HYP] (nmr-dev-env) bash -x `which mri_sclimbic_seg` --s HAB_008_CST_2.4 + '[' '!' -e /usr/local/freesurfer/7.4.1 ']' + exec /usr/local/freesurfer/7.4.1/bin/fspython /usr/local/freesurfer/7.4.1/python/scripts/mri_sclimbic_seg --s HAB_008_CST_2.4 /usr/local/freesurfer/7.4.1/python/scripts/mri_sclimbic_seg --s HAB_008_CST_2.4 Excluding seg [853] Using CPU Illegal instruction (core dumped)

Heidi

________________________________ From: fsbuild fsbuild@contbay.com Sent: Sunday, August 20, 2023 10:41 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: Jacobs, Heidi I.,PHD HJACOBS@mgh.harvard.edu Subject: Re: [Freesurfer] ScLimbic issue

External Email - Use Caution

Check if you see the following output for these commands,

% which mri_sclimbic_seg /usr/local/freesurfer/7.4.1/bin/mri_sclimbic_seg

% which fspython /usr/local/freesurfer/7.4.1/bin/fspython

Try running that command as listed below followed by your own arguments to it, i.e. try,

% bash -x `which mri_sclimbic_seg` --s HAB_008_CST_2.4

... and send along the output ...

- R.

On Aug 20, 2023, at 21:31, Jacobs, Heidi I.,PHD HJACOBS@mgh.harvard.edu wrote:

mri_sclimbic_seg