Re: [Freesurfer] mprage flag in recon-all

mri_normalize is a binary so you can't, just recon-all.

On Fri, 31 May 2013, Caspar M. Schwiedrzik wrote:

I only find flags for mri_normalize and mri_segment in recon-all, and I have trouble reading the contents mri_normalize with a regular text editor. caspar

2013/5/31 Bruce Fischl fischl@nmr.mgh.harvard.edu Hi Caspar

  it changes some parameters to the intensity normalization and
  segmentation to account for the lower SNR and increased CNR in
  the mprage. You'll need to look in the recon-all script for the
  details

  cheers
  Bruce


  On Thu, 30 May 2013, Caspar M. Schwiedrzik wrote:

        Hi!
        Is there more documentation on what settings the
        mprage flag enables in
        recon-all?
        Specifically, I would be interested which individual
        steps it affects and
        what  the parameters are for each of the steps.
        Thanks!
        Caspar

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