Dear Wei, Can you please provide us with the full log? Cheers, /E
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Wei Shao wshao@research.baycrest.org Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 1, 2021 at 21:14 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampal subfield segmentation
External Email - Use Caution Hi, Freesurfer expert
I tried Hippocampal subfield segmentation with an additional T2 scan by using FS7.1.0
Here is the log error massage
Attempted to access cropping(1); index out of bounds because numel(cropping)=0.
Error in applyCropping (line 7)
Error in segmentSubjectT1T2_autoEstimateAlveusML (line 950)
MATLAB:badsubscript @#@FSTIME 2021:03:01:20:38:39 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 e 243.67 S 3.47 U 220.01 P 91% M 1248336 F 144 R 909119 W 0 c 49601 w 14948 I 320352 O 429920 L 30.66 34.91 35.10 @#@FSLOADPOST 2021:03:01:20:42:43 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 47.20 43.27 38.55 Linux gra813 3.10.0-1127.8.2.el7.x86_64 #1 SMP Tue May 12 16:57:42 UTC 2020 x86_64 GNU/Linux
T2 hippocampal subfields exited with ERRORS at Mon Mar 1 20:42:43 EST 2021
For more details, see the log file /home/weishao//BAY11958/scripts/hippocampal-subfields-T2.T2.log
Could you tell me how to fix this? Thanks.
Best, Wei