Thanks, way. This is an unsual one. Does aseg.mgz look OK?

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Wei Shao wshao@research.baycrest.org Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 1, 2021 at 23:40 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Hippocampal subfield segmentation

External Email - Use Caution Hi, Dr. Iglesias Gonzalez

Here is the full log, Thanks

Best, Wei

On Mon, Mar 1, 2021 at 10:33 PM Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edumailto:JIGLESIASGONZALEZ@mgh.harvard.edu> wrote: Dear Wei, Can you please provide us with the full log? Cheers, /E

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.comhttp://secure-web.cisco.com/1QG7uGIHTOdZ2Mb_tpU68iZ_owRYsTQl1DBCO6QrSAb64Kb0Rzx4ZOx3LNeUg8cYWEvLm-ybTeV1JGTHuVgY1mPHQkB2CmTV1abh94ZqQMIdEuu9BWHGad2nW93ap3bPSQo7vfA2A8K_RNQcgq4iyn6EPQbMinxBF5sIhnLQ8afvzuSH1H7FKJPfFaASueXmm0wAWzLcQfenpnINPHN0pxmolEUVEIxDvF6S9Sy1lCrwLo2vFrA_dVs0tjaG_TwJXCb4SCij-8ijuqTNnJ26T-A/http%3A%2F%2Fwww.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.orgmailto:wshao@research.baycrest.org> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Monday, March 1, 2021 at 21:14 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Hippocampal subfield segmentation

External Email - Use Caution Hi, Freesurfer expert

I tried Hippocampal subfield segmentation with an additional T2 scan by using FS7.1.0

Here is the log error massage

Attempted to access cropping(1); index out of bounds because numel(cropping)=0.

Error in applyCropping (line 7)

Error in segmentSubjectT1T2_autoEstimateAlveusML (line 950)

MATLAB:badsubscript @#@FSTIME 2021:03:01:20:38:39 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 e 243.67 S 3.47 U 220.01 P 91% M 1248336 F 144 R 909119 W 0 c 49601 w 14948 I 320352 O 429920 L 30.66 34.91 35.10 @#@FSLOADPOST 2021:03:01:20:42:43 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 47.20 43.27 38.55 Linux gra813 3.10.0-1127.8.2.el7.x86_64 #1 SMP Tue May 12 16:57:42 UTC 2020 x86_64 GNU/Linux

T2 hippocampal subfields exited with ERRORS at Mon Mar 1 20:42:43 EST 2021

For more details, see the log file /home/weishao//BAY11958/scripts/hippocampal-subfields-T2.T2.log

Could you tell me how to fix this? Thanks.

Best, Wei _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1yoXS6dKZ-NgQmNn6ZWsu7E6Fy28mmAvwujVOWjd0TXC-2rnYtbfOToNdj8FNRMl9_r5G8pvA0y52cLEZFh6ArDsWdkuOwbOa_KluGStvj2OQyVepzLH4HE5ODIpzKRsK15XP970jorSINqsZRyBgnFcxFZJRes9cFrFSURI2jqckcNTD2AWH86HiraJqydQcHdqq2GxQ-BMsVtdOi98xqbXk3kJAxAf1hR-bNclwgewkP4DdSlUYTpBkzn5HP-hCNXbNCr3uIvKMC0MLJz68nQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer