Hello,
First of all, apologies for asking for help three times today! THings will hopefully become clearer once I get used to FS a bit; I really do appreciate the amazing support provided by the team behind FreeSurfer!
I ran the following command on one of my structurals:
*recon-all -subject M01 -i M01.nii.gz -all*
After a few minutes, recon-all ended with the following message:
*Assertion failed at line 827 in file templates/CachedArray.cc* *nu_estimate_np_and_em: crashed while running volume_stats (termination status=256)* *nu_correct: crashed while running nu_estimate_np_and_em (termination status=256)* *ERROR: nu_correct* *Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC 2009 i686 GNU/Linux*
I apologise for reporting an error that's already been reported in the past, but unfortunately the solutions suggested in those past threads did not work in my case. To address a few of them:
- my PATH (listed below) does not seem to include two MNI installations * /home/virtualuser/freesurfer/bin:/home/virtualuser/freesurfer/fsfast/bin:/home/virtualuser/freesurfer/tktools:/home/virtualuser/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games * - the version of FreeSurfer that I installed is the latest disk image available on the website (freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full) - I did not see any dev version that would presumably include any missing libraries presumably implied by the above error - I tried updating the Xubuntu inside my VirtualBox, however it reports an insufficient space problem that from I can see does not have a trivial fix
Advance thanks for any help! Tudor