External Email - Use Caution
Are you sure you're terminal is setup in tcsh or csh? If you're using bash instead, you want "export SUBJECTS_DIR=/project/bil/Nada" Take a look at: https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Mac or https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux to see if you may have missed something.
On Wed, Aug 22, 2018 at 4:37 AM Nada Naguib nadann@bu.edu wrote:
External Email - Use CautionHello,
I have been using bbregister in this format
bbregister —mov dkti4d.nii —s NewT2out —init-fsl —bold —lea register.lta
NewT2out is the output of the free surfer processing on the T1 image and dkti4d.nii is the template file I want to use for the registration.
it has worked before but now there is a new error
ERROR: cannot find NewT2out in /project/iconic/apps/freesurfer/5.3.0/install/subjects
even though I have already ran the command:
setenv SUBJECTS_DIRECTORY /project/bil/Nada
This path is where both NewT2out and dkti4d.nii are located.
I don’t understand what is going wrong
Best Nada
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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