Hello,
I am having trouble with the MRI_convert portion of recon-all. I get the error below when I run recon-all and when I run MRI_convert independently of recon-all.
WARNING: file Desktop/3T_20161201_131733544/MR000004 does not contain a Siemens ASCII header
has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header
Prior to getting the error I get the following message:
Scanning Directory
INFO: Found 2316 files in Desktop/3T_20161201_131733544
INFO: Scanning for Series Number 2
INFO: found 192 files in series
INFO: loading series header info.
INFO: sorting.
RunNo = 1
WARNING: Run 1 appears to be truncated
Files Found: 192, Files Expected (lRep+1): 1
Do you have any suggestions? Additional system info is below: 1) OS: MacOS Sierra (10.12.2) 2) FS software version: freesurfer-Darwin-lion-stable-pub-v5.3.0 3) Data is MPRAGE directly from a siemens machine
*Caleb C. Comoglio, BSBME* Graduate Research Fellow Bioelectronics Laboratory, IUPUI ccomogli@iupui.edu (574) 727-1620