Not sure. Can you upload the set to

https://gate.nmr.mgh.harvard.edu/filedrop2

and I'll take a look

On 01/10/2017 03:31 PM, Caleb Comoglio wrote:

Hello,

I am having trouble with the MRI_convert portion of recon-all. I get the error below when I run recon-all and when I run MRI_convert independently of recon-all.

WARNING: file Desktop/3T_20161201_131733544/MR000004 does not contain a Siemens ASCII header

has this file been anonymized?

ERROR: cannot unpack mosiacs without ASCII header

Prior to getting the error I get the following message:

Scanning Directory

INFO: Found 2316 files in Desktop/3T_20161201_131733544

INFO: Scanning for Series Number 2

INFO: found 192 files in series

INFO: loading series header info.

INFO: sorting.

RunNo = 1

WARNING: Run 1 appears to be truncated

Files Found: 192, Files Expected (lRep+1): 1

Do you have any suggestions? Additional system info is below:

1. OS: MacOS Sierra (10.12.2)
2. FS software version: freesurfer-Darwin-lion-stable-pub-v5.3.0
3. Data is MPRAGE directly from a siemens machine

*Caleb C. Comoglio, BSBME

Graduate Research Fellow Bioelectronics Laboratory, IUPUI ccomogli@iupui.edu mailto:ccomogli@iupui.edu (574) 727-1620

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