Hi Bruce, I did try, but I am so sorry that size of the attachment is too big to send in the mail list. All the best. Rujing Zha
2014-02-13
charujing123
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-02-13 22:00 主题：Re: {Filename?} Re: Re: [Freesurfer] recon-all CTABreadASCII error 收件人："charujing123"charujing123@163.com 抄送：
Hi Rujing
can you cc the list so that others can help? thanks Bruce On Thu, 13 Feb 2014, charujing123 wrote:
Warning: This message has had one or more attachments removed (recon-all.cmd). Please read the "NMR-MGH-Attachment-Warning.txt" attachment(s) for more information.
Hi Bruce, Some output of recon-all can be got in the attachment. Thanks Bruce. Rujing Zha
2014-02-13
charujing123
发件人："charujing123"charujing123@163.com 发送时间：2014-02-13 21:48 主题：Re: [Freesurfer] recon-all CTABreadASCII error 收件人："Bruce Fischl"fischl@nmr.mgh.harvard.edu 抄送："freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu
Hi Bruce, I ran this code succefully last year. But I cannot completely this command in recent days as errors just above. There is nothing change in the server during this time. According this ERROR information, I asked administrator to delete some files in the /tmp folder and change the write access. But it was still report similar error. And I ran this command as root, then it terminated as a similar situation. Thanks Bruce. All the best. Rujing Zha
2014-02-13
charujing123
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-02-13 21:33 主题：Re: [Freesurfer] recon-all CTABreadASCII error 收件人："charujing123"charujing123@163.com 抄送："freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu
Hi Rujing
do you have write access to /tmp? Or is it full maybe?
Bruce On Thu, 13 Feb 2014, charujing123 wrote:
Dear FS experts, It represents this message in the command window after ran "recon-all -autorecon-pial -s CON_EIU01 -no-isrunning": Reading annotation reading colortable from annotation file... colortable with 36 entries read originally/autofs/space/terrier_001/users
/nicks/freesurfer/average/colortable_desikan
_killiany.txt) CTABwriteFileASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not
open for writing
Seg base 1000 Permission denied CTABreadASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not open
file No such file or directory ERROR: reading /tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab Linux centos2 2.6.18-308.20.1.el5xen #1 SMP Tue Nov 13 11:03:56 EST 2012
?? ?> x86_64 x86_64 x86_64 GNU/Linux
recon-all -s CON_EIU04 exited with ERRORS at Thu Feb 13 14:01:12 CST 2014
Thanks. All the best. Rujing Zha
2014-02-13
charujing123
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