Hello Doug,
I tried rerunning the -base creation step without any luck. It appears that this process is reliant on the removed file:
ERROR: cannot find /usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca
-Brendan ------------------------------ Message: 21 Date: Tue, 16 Feb 2016 16:40:43 -0500 From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] v.6.0 Permissions Error To: freesurfer@nmr.mgh.harvard.edu Message-ID: 56C3975B.60401@nmr.mgh.harvard.edu Content-Type: text/plain; charset=windows-1252; format=flowed
ok, try now
On 02/16/2016 04:38 PM, Grafe,Brendan P. (BIDMC - Neurology) wrote:
Hello all,
I am in the middle of a FreeSurfer v.6.0 longitudinal analysis, running on the Martinos cluster, and I received an error today during the (-base) template creation step regarding a file that the pipeline calls upon:
GCAread(/usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca): could not open file
I noticed that permissions access to this file are limited at present to the greve group and that the file was last modified earlier today. I'm unfamiliar with this component's functionality, but am assuming access to it is necessary for template creation. Would this simply be the issue?
----------------------------- Brendan P. Grafe MSc Clinical Research Assistant Berenson-Allen Center for Noninvasive Brain Stimulation Beth Israel Deaconess Medical Center 330 Brookline Avenue Boston, MA 02215 Tel: 617-667-0256 Fax: 617-975-5322
________________________________
This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you.