Hello, Freesurfer experts:
I am new to freesurfer and try to install the newest version of freesurfer in Ubuntu system. I closely followed the instructions, and the only difference is that I installed it in my Documents, instead of local folder.
Below is the output after “source $FREESURFER_HOME/SetUpFreeSurfer.sh”
-------- freesurfer-Linux-centos4-stable-pub-v5.0.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /home/jie/Documents/freesurfer/
FSFAST_HOME /home/jie/Documents/freesurfer//fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /home/jie/Documents/freesurfer//subjects
MNI_DIR /home/jie/Documents/freesurfer//mni
Everything seems fine and I also added the .license file to the freesurfer folder.
But when I test it by “tkmedit bert orig.mgz”, it reponds “Illegal instruction”
If I type in “recon-all”, it will show
“ Required Arguments:
-subjid <subjid>
-<process directive>…... ” and the other arguments.
How to fix the problem and make Fressurfer run? Any help is appreciated. Thanks a lot!
Jie