Please send the result of the command:

uname -a

On Mon, Feb 21, 2011 at 10:31, Carolina Valencia cvalencia@linkdx.com.cowrote:

Hi Bruce,

I'm experimenting problems with the installation on Ubuntu too. There's is warning in the welcome message, it seems that something is missing:

-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist FREESURFER_HOME /home/cvalencia/Descargas/freesurfer FSFAST_HOME /home/cvalencia/Descargas/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/cvalencia/Descargas/freesurfer/subjects MNI_DIR /home/cvalencia/Descargas/freesurfer/mni FSL_DIR /usr/share/fsl/4.1

I try to test it and it shows cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit /home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de ejecutable incorrecto. Binary file not executable.

Thanks a lot,

Carolina

2011/2/18 Bruce Fischl fischl@nmr.mgh.harvard.edu

...

Hi Jie,

what hardware are you using? Is it a 64 bit operating system?

cheers Bruce

On Sat, 19 Feb 2011, Liukarl wrote:

...

Hello, Freesurfer experts:

I am new to freesurfer and try to install the newest version of freesurfer in Ubuntu system. I closely followed the instructions, and the only difference is that I installed it in my Documents, instead of local folder.

Below is the output after “source $FREESURFER_HOME/SetUpFreeSurfer.sh”

---

freesurfer-Linux-centos4-stable-pub-v5.0.0 --------

Setting up environment for FreeSurfer/FS-FAST (and FSL)

FREESURFER_HOME /home/jie/Documents/freesurfer/

FSFAST_HOME /home/jie/Documents/freesurfer//fsfast

FSF_OUTPUT_FORMAT nii

SUBJECTS_DIR /home/jie/Documents/freesurfer//subjects

MNI_DIR /home/jie/Documents/freesurfer//mni

Everything seems fine and I also added the .license file to the freesurfer folder.

But when I test it by “tkmedit bert orig.mgz”, it reponds “Illegal instruction”

If I type in “recon-all”, it will show

“ Required Arguments:

-subjid <subjid>

-<process directive>…... ” and the other arguments.

How to fix the problem and make Fressurfer run? Any help is appreciated. Thanks a lot!

Jie

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

--

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.