[Freesurfer] fcseed-config

Hello Freesurferers,

I’m trying to use a functional label (extracted from task functional BOLD data), as a seed for functional connectivity. I tried to use the fcseed-config with -roi , but when I ran the fcseed-sess, I got this error: “If: expression syntax error”. Could you please let me know what the problem is?

fcseed-config -roi ${label}.label -fcname ${label}.dat -fsd rest -rlf restruns -mean -cfg ${label}.config -force

fcseed-sess -s ${subj} -d ../ -cfg /${label}.config

Thanks, Mona

Zahra (Mona) Nasiriavanaki, M.D. Postdoctoral Research Fellow Department of Psychiatry Massachusetts General Hospital 149 13th Street, 149-2615 Boston, MA, USA, 02129