you should not pass it a label. If you look at the help, Functional ROI-based options   -roi fcconfig : as created by funcroi-confg

On 7/1/2021 10:58 AM, Nasiriavanaki, Zahra wrote:

Hello Freesurferers,

I’m trying to use a functional label (extracted from task functional BOLD data), as a seed for functional connectivity. I tried to use the fcseed-config with -roi , but when I ran the fcseed-sess, I got this error: “If: expression syntax error”. Could you please let me know what the problem is?

fcseed-config  -roi ${label}.label  -fcname ${label}.dat -fsd rest -rlf restruns -mean -cfg ${label}.config -force

fcseed-sess  -s ${subj}   -d ../  -cfg /${label}.config

Thanks, Mona

*Zahra (Mona) Nasiriavanaki, M.D.* Postdoctoral Research Fellow Department of Psychiatry Massachusetts General Hospital 149 13th Street, 149-2615 Boston, MA, USA, 02129

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