The isosurface option is only for 3D display. It does not apply to 2D views. However, I have added option to select labels to display from the look up table in our latest development version. You can download the development build here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev
Best, Ruopeng
On Apr 9, 2017, at 6:56 AM, amir hosein hoseinbat@gmail.com wrote:
Dear Ruopeng,
Thanks a lot for your reply.
I am sorry, but I still could not fix this.
Do you mean a command like this:
freeview –v aparc+aseg.mgz:colormap=lut:isosurface=2032,2035
I could not perform what I have in mind using this command. I want to simultaneously show several different brain areas on a T1 image. The labels are so different; as examples, one is 14, one is 100, and one is 1250.
Currently I am extracting labels, and using MATLAB I overlay them on a T1 image.
I am sure Freesurfer should be able to nicely perform this, but this is not resolved for me yet :)
Many thanks again,
Amir
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