The isosurface option is only for 3D display. It does not apply to 2D views. However, I have added option to select labels to display from the look up table in our latest development version. You can download the development build here:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev

Best, Ruopeng

On Apr 9, 2017, at 6:56 AM, amir hosein hoseinbat@gmail.com wrote:

Dear Ruopeng,

Thanks a lot for your reply.

I am sorry, but I still could not fix this.

Do you mean a command like this:

freeview –v aparc+aseg.mgz:colormap=lut:isosurface=2032,2035

I could not perform what I have in mind using this command. I want to simultaneously show several different brain areas on a T1 image. The labels are so different; as examples, one is 14, one is 100, and one is 1250.

Currently I am extracting labels, and using MATLAB I overlay them on a T1 image.

I am sure Freesurfer should be able to nicely perform this, but this is not resolved for me yet :)

Many thanks again,

Amir

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer