Re: [Freesurfer] question about hippocampal vols

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Dear Ani, What was the exact command you used? Cheers, /Eugenio

-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Anik Dar aniqa4pm@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, 1 May 2018 at 15:39 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] question about hippocampal vols

External Email - Use Caution Hi All,

I have run

quantifyHAsubregions.sh hippoSf <T1>-<analysisID> <output_file> <OPTIONAL_SUBJECTS_DIR>

and have the volumes for the hippocampal subfields. From which of the following segmentation files are these volumes computed from ?

lh.hippoAmygLabels-T1.v21.CA.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.v21.CA.mgz lh.hippoAmygLabels-T1.v21.FS60.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.v21.FS60.mgz lh.hippoAmygLabels-T1.v21.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.v21.HBT.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.v21.HBT.mgz lh.hippoAmygLabels-T1.v21.mgz

Please let me know.

Thanks

Ani