Also if I try to avoid this step I get a new error
I don't know if this adds helpful insight!
fslswapdim /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz x -y z /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz
INFO: left-right orientation was flipped by fslswapdim
fslorient -forceradiological /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz
mri_probedicom --i //media/Data/Temple/Temple_Tracula/31313422_10128/dti_dicom/31313422_10128.MR.Temple.9.1.20140806.182244.xfrp16.dcm
/media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0info.dat
TE: Subscript out of range.
fslroi /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi_eddy.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/lowb.nii.gz 0 1
ERROR: Unrecognized format of phase map /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz
On Sat, Dec 3, 2016 at 2:42 PM, Katherine Damme katherine.damme@gmail.com wrote:
Hello!
I have been getting a "set: No match." error. I haven't been able to sort out what is causing it.
Attached you will find the configuration file, command, and log files associated with this error.
"mv -f /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot xfmrot /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi.ecclog /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs set: No match."