External Email - Use Caution
Hi liangfeng kuang,
I think FreeSurfer is failing to find your subject as you set the $SUBJECTS_DIR to .../kuang_dev_results but your actual subject is in .../kaung_dev_data/... .
Best, Horsng
On Feb 26, 2021, at 10:41 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
Not sure, the command line looks correct. Can you run it with -debug as the first flag? Capture the output in a file (don't take a picture).
On 2/24/2021 6:14 AM, 况况 wrote:
External Email - Use Cautionhello,
i downloaded dev version, input FREESURFER_HOME=/home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer export SUBJECTS_DIR=/home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer/kuang_dev/kuang_dev_results source $FREESURFER_HOME/SetUpFreeSurfer.sh then run recon-all -s ch2 -i /home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer/kuang_dev/kuang_dev_data/ch2/ch2.nii-all –qcache -parallel <>, then and appeared 'ERROR: must specify a subject id', what should i do to solve it?
best wishes liangfeng kuang
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