Hi Freesurfer,
I ran into the following error when running make_average_subject. The following output is shown after make_average_surface is done.
/Volumes/fMRI/Scanner_Data setenv SUBJECTS_DIR /Volumes/fMRI/Scanner_Data/ sdout /Volumes/fMRI/Scanner_Data/ mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh --apply_transform /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0 0 0 mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh --apply_transform /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0 0 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz... TR=2200.00, TE=4.26, TI=1200.00, flip angle=9.00 i_ras = (-1, -1.16415e-10, 1.27329e-11) j_ras = (1.0732e-10, -7.26432e-08, -1) k_ras = (3.49246e-10, 1, -7.07805e-08) INFO: Reading transformation from file /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm... Reading transform with LTAreadEx() INFO: Applying transformation from file /Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 1.182 0.047 -0.032 -0.505; -0.064 1.202 0.238 18.683; 0.093 -0.236 1.271 -31.892; 0.000 0.000 0.000 1.000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: LTA dst geometry information missing! We assume that the dst volume passed is the same as the dst for the transform. INFO: LTA src geometry information missing! We assume that the src volume passed is the same as the src for the transform. mghWrite(/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh, -1): could not open file --------------------------------- Applying LTAtransformInterp (resample_type 1) writing to /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh... ERROR: failure writing /Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh /Volumes/fMRI/Scanner_Data ERROR: mri_convert failed. ERROR: make_average_volume
Thank you very much in advance for helping out! Best, Qijing