Re: [Freesurfer] niiRead error

I think this may be fixed in 6.0

On 7/31/17 12:43 PM, Francesca Strappini wrote:

Thanks for the reply.

freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.

I opened it with fslview and it looks like a normal 3-dimentional file.

Thanks Francesca

2017-07-31 16:38 GMT+02:00 Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>:

what version of FS are you running?


On 7/30/17 12:37 PM, Bruce Fischl wrote:
> Hi Francesca
>
> why is the nifti 5-dimensional? The code is complaining that it
doesn't
> know how to intepret the input volume
>
> cheers
> Bruce
> On Sun, 30 Jul 2017, Francesca
> Strappini wrote:
>
>> Hi, I'm trying to register to the surface a t-test map created
with afni
>> (3dttest++) but I got this error message:
>>
>> mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage
--surf-fwhm 3
>> --hemi lh --o movierestTest_lh.nii.gz
>>
>> srcvol = movierestTest.nii.gz
>> srcreg unspecified
>> srcregold = 0
>> srcwarp unspecified
>> surf = white
>> hemi = lh
>> reshape = 0
>> interp = nearest
>> float2int = round
>> GetProjMax = 0
>> INFO: float2int code = 0
>> niiRead(): 5 dimensions
in/media/francesca/DATA/Shared/fmri-experiments/fc_categories/searchlight/tes
>> rest/movierestTest.nii.gz; unsupported
>> Invalid argument
>> ERROR: could not read movierestTest.nii.gz as type 24
>>
>> Thanks
>> Francesca
>>
>>
>> --
>> Francesca Strappini, Ph.D.
>> Neurobiology Department
>> Weizmann Institute of Science
>> 234 Herzl Street, Rehovot 7610001 Israel
>> Tel.: +972 58 444 2584
>> E-mail: francesca.strappini@weizmann.ac.il
<mailto:francesca.strappini@weizmann.ac.il>
>>
>>
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