Hi, I'm trying to register to the surface a *t*-test map created with afni (3dttest++) but I got this error message:
mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage --surf-fwhm 3 --hemi lh --o movierestTest_lh.nii.gz
srcvol = movierestTest.nii.gz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): 5 dimensions in /media/francesca/DATA/Shared/fmri-experiments/fc_categories/searchlight/tesrest/movierestTest.nii.gz; unsupported Invalid argument ERROR: could not read movierestTest.nii.gz as type 24
Thanks Francesca
Hi Francesca
why is the nifti 5-dimensional? The code is complaining that it doesn't know how to intepret the input volume
cheers Bruce On Sun, 30 Jul 2017, Francesca Strappini wrote:
Hi, I'm trying to register to the surface a t-test map created with afni (3dttest++) but I got this error message:
mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage --surf-fwhm 3 --hemi lh --o movierestTest_lh.nii.gz
srcvol = movierestTest.nii.gz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): 5 dimensions in/media/francesca/DATA/Shared/fmri-experiments/fc_categories/searchlight/tes rest/movierestTest.nii.gz; unsupported Invalid argument ERROR: could not read movierestTest.nii.gz as type 24
Thanks Francesca
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il
what version of FS are you running?
On 7/30/17 12:37 PM, Bruce Fischl wrote:
Hi Francesca
why is the nifti 5-dimensional? The code is complaining that it doesn't know how to intepret the input volume
cheers Bruce On Sun, 30 Jul 2017, Francesca Strappini wrote:
Hi, I'm trying to register to the surface a t-test map created with afni (3dttest++) but I got this error message:
mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage --surf-fwhm 3 --hemi lh --o movierestTest_lh.nii.gz
srcvol = movierestTest.nii.gz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): 5 dimensions in/media/francesca/DATA/Shared/fmri-experiments/fc_categories/searchlight/tes rest/movierestTest.nii.gz; unsupported Invalid argument ERROR: could not read movierestTest.nii.gz as type 24
Thanks Francesca
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks for the reply.
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.
I opened it with fslview and it looks like a normal 3-dimentional file.
Thanks Francesca
2017-07-31 16:38 GMT+02:00 Douglas Greve greve@nmr.mgh.harvard.edu:
what version of FS are you running?
On 7/30/17 12:37 PM, Bruce Fischl wrote:
Hi Francesca
why is the nifti 5-dimensional? The code is complaining that it doesn't know how to intepret the input volume
cheers Bruce On Sun, 30 Jul 2017, Francesca Strappini wrote:
Hi, I'm trying to register to the surface a t-test map created with afni (3dttest++) but I got this error message:
mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage
--surf-fwhm 3
--hemi lh --o movierestTest_lh.nii.gz
srcvol = movierestTest.nii.gz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): 5 dimensions in/media/francesca/DATA/
Shared/fmri-experiments/fc_categories/searchlight/tes
rest/movierestTest.nii.gz; unsupported Invalid argument ERROR: could not read movierestTest.nii.gz as type 24
Thanks Francesca
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I think this may be fixed in 6.0
On 7/31/17 12:43 PM, Francesca Strappini wrote:
Thanks for the reply.
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.
I opened it with fslview and it looks like a normal 3-dimentional file.
Thanks Francesca
2017-07-31 16:38 GMT+02:00 Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>:
what version of FS are you running? On 7/30/17 12:37 PM, Bruce Fischl wrote: > Hi Francesca > > why is the nifti 5-dimensional? The code is complaining that it doesn't > know how to intepret the input volume > > cheers > Bruce > On Sun, 30 Jul 2017, Francesca > Strappini wrote: > >> Hi, I'm trying to register to the surface a t-test map created with afni >> (3dttest++) but I got this error message: >> >> mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage --surf-fwhm 3 >> --hemi lh --o movierestTest_lh.nii.gz >> >> srcvol = movierestTest.nii.gz >> srcreg unspecified >> srcregold = 0 >> srcwarp unspecified >> surf = white >> hemi = lh >> reshape = 0 >> interp = nearest >> float2int = round >> GetProjMax = 0 >> INFO: float2int code = 0 >> niiRead(): 5 dimensions in/media/francesca/DATA/Shared/fmri-experiments/fc_categories/searchlight/tes >> rest/movierestTest.nii.gz; unsupported >> Invalid argument >> ERROR: could not read movierestTest.nii.gz as type 24 >> >> Thanks >> Francesca >> >> >> -- >> Francesca Strappini, Ph.D. >> Neurobiology Department >> Weizmann Institute of Science >> 234 Herzl Street, Rehovot 7610001 Israel >> Tel.: +972 58 444 2584 >> E-mail: francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
It does work with 6.0, thank you!
2017-07-31 20:59 GMT+03:00 Douglas Greve greve@nmr.mgh.harvard.edu:
I think this may be fixed in 6.0
On 7/31/17 12:43 PM, Francesca Strappini wrote:
Thanks for the reply.
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.
I opened it with fslview and it looks like a normal 3-dimentional file.
Thanks Francesca
2017-07-31 16:38 GMT+02:00 Douglas Greve greve@nmr.mgh.harvard.edu:
what version of FS are you running?
On 7/30/17 12:37 PM, Bruce Fischl wrote:
Hi Francesca
why is the nifti 5-dimensional? The code is complaining that it doesn't know how to intepret the input volume
cheers Bruce On Sun, 30 Jul 2017, Francesca Strappini wrote:
Hi, I'm trying to register to the surface a t-test map created with
afni
(3dttest++) but I got this error message:
mri_vol2surf --mov movierestTest.nii.gz --regheader fsaverage
--surf-fwhm 3
--hemi lh --o movierestTest_lh.nii.gz
srcvol = movierestTest.nii.gz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): 5 dimensions in/media/francesca/DATA/Shared
/fmri-experiments/fc_categories/searchlight/tes
rest/movierestTest.nii.gz; unsupported Invalid argument ERROR: could not read movierestTest.nii.gz as type 24
Thanks Francesca
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 <+972%2058-444-2584> E-mail: francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 <+972%2058-444-2584> E-mail: francesca.strappini@weizmann.ac.il
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Douglas Greve -
Francesca Strappini