Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam