Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists.Do you have any suggestion?Thanks,Maryam
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam
Hi Bruce,Thanks for your reply, I will take look on aseg volume. Best,Mrayam
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Bruce, How can I download version 6?
Best,Maryam
Regards,Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Maryam We are working hard to get it out, but it's not quite ready yet. We will make an announcement when we have a beta version Bruce
On Jan 28, 2016, at 8:25 PM, maryam koochaki maryam_koochaki@yahoo.com wrote:
Hi Bruce, How can I download version 6?
Best, Maryam
Regards, Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce
On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks, I also have another major problem with the subjects I am working on.Two of the subjects intend to freeze at #@# Fix Topology rh step while running reconstruction process. CORRECTING DEFECT 12 (vertices=29993, convex hull=7603) I will upload one of the subjects to your ftp site, if you could take a look to see what is the defect. Really appreciate your help in advance, Maryam
Regards,Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi MaryamWe are working hard to get it out, but it's not quite ready yet. We will make an announcement when we have a beta versionBruce On Jan 28, 2016, at 8:25 PM, maryam koochaki maryam_koochaki@yahoo.com wrote:
Hi Bruce, How can I download version 6?
Best,Maryam
Regards,Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in Lateral Ventricle. As you can see in the image attached, the big part is excluded in both hemisphere. I tried to fill it by editing wm volume but the problem still exists. Do you have any suggestion? Thanks, Maryam
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
sure, let us know after you have uploaded it.
Bruce On Fri, 29 Jan 2016, maryam koochaki wrote:
Thanks, I also have another major problem with the subjects I am working on. Two of the subjects intend to freeze at #@# Fix Topology rh step while running reconstruction process. CORRECTING DEFECT 12 (vertices=29993, convex hull=7603)
I will upload one of the subjects to your ftp site, if you could take a look to see what is the defect. Really appreciate your help in advance,
Maryam
Regards, Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam We are working hard to get it out, but it's not quite ready yet. We will make an announcement when we have a beta version Bruce
On Jan 28, 2016, at 8:25 PM, maryam koochaki maryam_koochaki@yahoo.com wrote:
Hi Bruce,How can I download version 6?
Best, Maryam
Regards, Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in
Lateral
Ventricle. As you can see in the image attached, the big part is
excluded in
both hemisphere. I tried to fill it by editing wm volume but the
problem
still exists. Do you have any suggestion? Thanks, Maryam
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Bruce,I uploaded yesterday. best, Maryam
Regards,Maryam Kouchakidivkolaei
On Friday, January 29, 2016 5:47 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sure, let us know after you have uploaded it.
Bruce On Fri, 29 Jan 2016, maryam koochaki wrote:
Thanks, I also have another major problem with the subjects I am working on. Two of the subjects intend to freeze at #@# Fix Topology rh step while running reconstruction process. CORRECTING DEFECT 12 (vertices=29993, convex hull=7603)
I will upload one of the subjects to your ftp site, if you could take a look to see what is the defect. Really appreciate your help in advance,
Maryam
Regards, Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam We are working hard to get it out, but it's not quite ready yet. We will make an announcement when we have a beta version Bruce
On Jan 28, 2016, at 8:25 PM, maryam koochaki maryam_koochaki@yahoo.com wrote:
Hi Bruce, How can I download version 6?
Best, Maryam
Regards, Maryam Kouchakidivkolaei
On Thursday, January 28, 2016 5:55 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Maryam
have you look at the aseg? I suspect that it didn't properly handle the very large ventricles in this subject. Try manually editing it. V6 handles this kind of thing significantly better
cheers Bruce On Thu, 28 Jan 2016, maryam koochaki wrote:
Hi Bruce, I am editing a brain with Freesurfer version 5.3. I have a issue in
Lateral
Ventricle. As you can see in the image attached, the big part is
excluded in
both hemisphere. I tried to fill it by editing wm volume but the
problem
still exists. Do you have any suggestion? Thanks, Maryam
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
maryam koochaki