Hi
I am trying to launch the LGI option, but the program seems to wait for a response, here is the complete output,. Even if I type yes it doesn't seems to continue.
Do you know how to solve this?
Thanks in advance
Leila
[cammoun@lts1pc72 ~/freesurfer]# recon-all -lgi -sid chuv60
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects
Actual FREESURFER_HOME /home/cammoun/freesurfer
-rwxrwxrwx 1 root root 569567 Apr 15 18:20 /usr/local/freesurfer/subjects/chuv60/scripts/recon-all.log
Linux lts1pc72.epfl.ch 2.6.20-1.2944.fc6 #1 SMP Tue Apr 10 17:46:00 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /home/cammoun/freesurfer
Previous: /usr/local/freesurfer
/usr/local/freesurfer/subjects/chuv60/surf
#--------------------------------------------
#@# Local Gyrification Index lh Tue Apr 15 18:21:04 CEST 2008
mris_compute_lgi --i lh.pial
=================
rm -Rf tmp-mris_compute_lgi
=================
=================
mkdir -p tmp-mris_compute_lgi
=================
=================
mris_fill -c -r 1 lh.pial tmp-mris_compute_lgi/lh.pial.filled.mgz
=================
reading surface from lh.pial...
writing filled volume to tmp-mris_compute_lgi/lh.pial.filled.mgz...
conforming output volume
setting resolution for intermediate calculations to 1.0000
=================
make_outer_surface('tmp-mris_compute_lgi/lh.pial.filled.mgz',15,'tmp-mris_co mpute_lgi/lh.pial-outer')
=================
Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen.
< M A T L A B >
Copyright 1984-2007 The MathWorks, Inc.
Version 7.5.0.338 (R2007b)
August 9, 2007
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
reading filled volume...
rm: remove regular file `/tmp/tmp8147237.mgh'?