Nick,
I copy this file but there is the same problem. So I try to find the mistake.
In the file asegstats2table in $FREESURFER_HOME/bin, I do this modify: in def write_table(options, rows, cols, table) (line 305) I replace r1c1 = 'Measure:%s' %( options.meas) with this line r1c1 = 'fsid '
and now the problem has solved and I can import aseg.volume in qdec. Now I want to ask if I can do this or there will be implicated errors.
Thanks, Anita di Iasio
2009/5/13 Nick Schmansky nicks@nmr.mgh.harvard.edu
Anita,
A required update to the aseg/aparcstats2table utilities was not included in v4.3.0. You can get it here:
http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/fixes/stats2table.tar....
copy this file to your $FREESURFER_HOME/bin, and then type:
gunzip stats2table.tar.gz
Nick
On Tue, 2009-05-12 at 17:40 +0200, anita di iasio wrote:
Hi all,
version FreeSurfer 4.3.0
Problem: when I run qdec and I generate Stats Data, I can't import aseg.volume Command line shows this error: ERROR: QdecDataTable::Load could not find column named 'fsid' or 'ID' in
/home/anita/freesurfer/subjects/qdec/stats_tables//aseg.volume.stats.dat!
The facts is: the first line of aseg.volume.stats.dat is "Measure:volume Left- Cerebral-White-Matter Left-Cerebral-Cortex....." and happens the mentioned problem but if I change in "fsid Left-Cerebral-White-Matter Left- Cerebral-Cortex Left-Lateral-Ventricle Left-Inf-Lat-Vent...." I can import the aseg.volume and all go right.
Is it a bug?Can you fix it?
Thanks all, Anita di Iasio _______________________________________________ Analysis-bugs mailing list Analysis-bugs@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/analysis-bugs