Re: [Freesurfer] Tkmed in VirtualBox and wm parcelation

Hi Martin

yes, there have been lots of changes. You should definitely get the most recent version

cheers Bruce

On Mon, 9 Sep 2013, Martin Kavec wrote:

Hi Bruce,

I thought to have a bit of fun with c++ instead of Matlab and would like to use ITK to open the wmparc.mgz. I have FreeSurfer sources dating back to December 2010including itkMGHImageIO. Have there been any important changes, based on which I should rather get the most recent version of the sources?

Thanks,

Martin

On Thu, Sep 5, 2013 at 5:49 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Martin

  1. Yes, I think people have done this.
  2. Yes, we automatically generate a white matter parcellation and store it in the volume
  wmparc.mgz

  if you have diffusion data you can check out Anastasia Yendiki's excellent TRACULA tool.

  cheers
  Bruce

  On Thu, 5 Sep 2013, Martin Kavec wrote:

  Hi all,

  I have two questions:

  1. Does tkmedit, or freeview work under VirtualBox
  2. Is it possible to parcelate white matter in freesurfer?

  Thanks,

  Martin

  Sent from my iPad

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