I'm trying to run a retinotopic analysis with the following commands:
mkanalysis-sess -analysis retino-lh -TR 2 -retinotopy 40 -paradigm rtopy.para -funcstem fmcpr.sm5.self -surface self lh -mcextreg -runlistfile retRuns -fwhm 0
selxavg3-sess -analysis retino-lh -s somesubject -df sessdir
and am getting the error:
>> >> >> >> /Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> $Id:
fast_selxavg3.m,v 1.88.2.2 2010/07/16 15:31:24 greve Exp $
outtop = /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data
Extension format = nii
ERROR: cannot determine format of /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
ERROR: attempting to read /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
------------------------------------------
ERROR: fast_selxavg3() failed\n
It looks like this might have something to do with analysis.info
... funcstem fmcpr.sm5.self ... RawSpace surface self lh ...
Should the funcstem have gotten '.lh' or should this be worked out by getana or selxavg3-sess?
Thanks,
~Jason