Re: [Freesurfer] recon-all did not create all files

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I copied it in the attached file.

Thank you, Ortal

On Thu, Aug 2, 2018 at 12:23 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

Hi Ortal

you need to send us the recon-all.log, otherwise we don't have the information we need to help you

cheers Bruce On Thu, 2 Aug 2018, Ortal Nakash wrote:

...

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Hi,

I tried to run the recon-all command on a single participant on a high memory cluster by typing:

qlogin -q qlogin.himem.q -l h_vmem=20G,s_vmem=20G

recon-all -i 103_T1.nii.gz -s 103T -sd /data/jag/cnds/ortal/freesurftest/C103/ -all

• Most of the necessary files were created, however the aparc.a2009 files

and the recon-all.done file were not.

sincerely,

Ortal Nakash

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