Hi List,
We just upgraded our Linux Box to Fedora 23 and installed csh so recon-all would run, yet we’re still getting crashed analyses.
Here is the error from my recon-all.error file: ------------------------------ SUBJECT 2_03T_N12_12_18441 DATE Thu Jan 21 16:20:16 GMT 2016 USER dsbarron HOST psyws26.psych.ox.ac.uk PROCESSOR x86_64 OS Linux Linux psyws26.psych.ox.ac.uk 4.3.3-300.fc23.x86_64 #1 SMP Tue Jan 5 23:31:01 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ /home/freesurfer/bin/recon-all PWD /home/dsbarron/Schmidt/Freesurfer/2_03T_N12_12_18441/mri CMD mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
Here is the error when I try to call just the mrinucorrect.mni function:
bash-4.3$ mri_nu_correct.mni mri_nu_correct.mni:1: parser error : Start tag expected, '<' not found #! /bin/tcsh -f ^ Document not parsed successfully.
Any suggestions/ideas? Please help! Thanks!
Cheers, Daniel