Hello,
I recently ran a batch file which seemed to run fine for nearly all the participants. Yet, when I did an asegstats2table command on all the subjects, I received the following error for three of them:
WARNING: cannot find /nfs/01/osu5323/freesurfer/freesurfer/subjects/JUL11_2009E/stats/aseg.stats. proceeding to next file WARNING: cannot find /nfs/01/osu5323/freesurfer/freesurfer/subjects/JUL12_2009C/stats/aseg.stats. proceeding to next file WARNING: cannot find /nfs/01/osu5323/freesurfer/freesurfer/subjects/JUL12_2009G/stats/aseg.stats. proceeding to next file
I checked the status of /scripts/recon-all-status.log, and it said that recon-all finished without errors. Would I want to only rerun step 11 of the recon-all workflow, which is Aseg volumetric labeling and statistics?
Thank you,
-Andrew