Hi everyone,
when I used following command:
mri_binarize --i myfile.img --match 17 --binval -1 --o your.lefthippo.nii.gz
then I got output your.lefthippo.nii.gz file when I read this file using FREEVIEW then it completly different from original mask.
Thanks
Dilip
On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Dilip
yes, freesurfer will do this for you, although the labels will be 17 for left hippocampus and 53 for right.
cheers Bruce On Thu, 6 Apr 2017, Dilip Puri wrote:
Hi everyone,
I am working on Hippocampus segmentation using Neural Networks for that
I need labeled images of Hippocampus corresponding to original images.
I am using OASIS Dataset for this. I want to generate labeled images
using FREESURFER. Is there any way to label each 3D co-ordinate
HippoCampus -1 Otherwise - 0
Here are sample files link
Kindly help me!
Dilip Puri IIIT Vadodara
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