Although it should be mentioned that outputs (even of subfields) are going to change due to differences in the regular freesurfer processing, as the subfields stream builds upon the regular FS stream.
Best, Martin
On 03/16/2016 10:52 AM, Eugenio Iglesias wrote:
I only changed some details (e.g., temporary directories) that do not affect the output.
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu
Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, March 16, 2016 3:49:31 PM Subject: Re: [Freesurfer] FreeSurfer 6.0
yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?
On Wed, 16 Mar 2016, Alan Francis wrote:
Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?
best,
Alan
On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
Hi Elizabeth: I ran the Hippocampal subfields on 6.0 beta. The parcellation looks great. Beta is available for download. Here is the URL: https://surfer.nmr.mgh.harvard.edu/fswiki/Download best, Alan On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul <elisabeth.paul@student.uva.nl> wrote: Dear ladies and gentlemen, for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it? Thank you very much in advance. Kind regards, Elisabeth Paul _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu
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