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Elisabeth Paul

16 Mar 2016 16 Mar '16

6:23 a.m.

Dear ladies and gentlemen,

for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it?

Thank you very much in advance.

Kind regards,

Elisabeth Paul

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Alan Francis

16 Mar 16 Mar

9:22 a.m.

Hi Elizabeth:

I ran the Hippocampal subfields on 6.0 beta. The parcellation looks great. Beta is available for download. Here is the URL:

https://surfer.nmr.mgh.harvard.edu/fswiki/Download

best,

Alan

On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul < elisabeth.paul@student.uva.nl> wrote:

...

Dear ladies and gentlemen,

for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it?

Thank you very much in advance.

Kind regards,

Elisabeth Paul

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| *Alan N. Francis PhD* NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu ezra_wegbreit@brown.edu afrancis@mclean.harvard.edu |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Bruce Fischl

9:57 a.m.

actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:

...

Hi Elizabeth:

I ran the Hippocampal subfields on 6.0 beta. The parcellation looks great. Beta is available for download. Here is the URL:

https://surfer.nmr.mgh.harvard.edu/fswiki/Download

best,

Alan

On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul elisabeth.paul@student.uva.nl wrote: Dear ladies and gentlemen,

for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it?

Thank you very much in advance.

Kind regards,

Elisabeth Paul

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan Francis

10:45 a.m.

Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

...

actually there is no beta yet, but hopefully within a week or so

On Wed, 16 Mar 2016, Alan Francis wrote:

Hi Elizabeth:

...
I ran the Hippocampal subfields on 6.0 beta. The parcellation looks great. Beta is available for download. Here is the URL:

https://surfer.nmr.mgh.harvard.edu/fswiki/Download

best,

Alan

On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul elisabeth.paul@student.uva.nl wrote: Dear ladies and gentlemen,

for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it?

Thank you very much in advance.

Kind regards,

Elisabeth Paul

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu

|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Bruce Fischl

10:49 a.m.

yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?

On Wed, 16 Mar 2016, Alan Francis wrote:

...

Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
        Hi Elizabeth:

        I ran the Hippocampal subfields on 6.0 beta. The
        parcellation looks great.
        Beta is available for download. Here is the URL:

        https://surfer.nmr.mgh.harvard.edu/fswiki/Download

        best,

        Alan

        On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul
        <elisabeth.paul@student.uva.nl> wrote:
              Dear ladies and gentlemen,

        for a research project I need to measure the volume
        of the different
        hippocampus subregions. I want to use FreeSurfer 6.0
        for that but I
        can only find FreeSurfer 5.3 online. Is FreeSurfer
        6.0 not yet
        released and if so, when will it be released? If it
        is already
        released, could you tell me where to find it?

        Thank you very much in advance.

        Kind regards,

        Elisabeth Paul

        _______________________________________________
        Freesurfer mailing list
        Freesurfer@nmr.mgh.harvard.edu
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


        The information in this e-mail is intended only for
        the person to whom
        it is
        addressed. If you believe this e-mail was sent to
        you in error and the
        e-mail
        contains patient information, please contact the
        Partners Compliance
        HelpLine at
        http://www.partners.org/complianceline . If the
        e-mail was sent to you
        in error
        but does not contain patient information, please
        contact the sender
        and properly
        dispose of the e-mail.




        --
        |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

        Alan N. Francis PhD
        NIDA T32  Fellow in Computational Neuroscience
        Brain Imaging Center
        McLean Hospital
        Harvard Medical School
        115 Mill Street, Belmont, MA 02478
        alanf@bwh.harvard.edu
        afrancis@mclean.harvard.edu
                                                            
                               
                                     
        |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Eugenio Iglesias

10:52 a.m.

I only changed some details (e.g., temporary directories) that do not affect the output.

Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, March 16, 2016 3:49:31 PM Subject: Re: [Freesurfer] FreeSurfer 6.0

yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?

On Wed, 16 Mar 2016, Alan Francis wrote:

...

Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
        Hi Elizabeth:

        I ran the Hippocampal subfields on 6.0 beta. The
        parcellation looks great.
        Beta is available for download. Here is the URL:

        https://surfer.nmr.mgh.harvard.edu/fswiki/Download

        best,

        Alan

        On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul
        <elisabeth.paul@student.uva.nl> wrote:
              Dear ladies and gentlemen,

        for a research project I need to measure the volume
        of the different
        hippocampus subregions. I want to use FreeSurfer 6.0
        for that but I
        can only find FreeSurfer 5.3 online. Is FreeSurfer
        6.0 not yet
        released and if so, when will it be released? If it
        is already
        released, could you tell me where to find it?

        Thank you very much in advance.

        Kind regards,

        Elisabeth Paul

        _______________________________________________
        Freesurfer mailing list
        Freesurfer@nmr.mgh.harvard.edu
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


        The information in this e-mail is intended only for
        the person to whom
        it is
        addressed. If you believe this e-mail was sent to
        you in error and the
        e-mail
        contains patient information, please contact the
        Partners Compliance
        HelpLine at
        http://www.partners.org/complianceline . If the
        e-mail was sent to you
        in error
        but does not contain patient information, please
        contact the sender
        and properly
        dispose of the e-mail.




        --
        |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

        Alan N. Francis PhD
        NIDA T32  Fellow in Computational Neuroscience
        Brain Imaging Center
        McLean Hospital
        Harvard Medical School
        115 Mill Street, Belmont, MA 02478
        alanf@bwh.harvard.edu
        afrancis@mclean.harvard.edu
                                                            
                               
                                     
        |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Martin Reuter

11:35 a.m.

Although it should be mentioned that outputs (even of subfields) are going to change due to differences in the regular freesurfer processing, as the subfields stream builds upon the regular FS stream.

Best, Martin

On 03/16/2016 10:52 AM, Eugenio Iglesias wrote:

...

I only changed some details (e.g., temporary directories) that do not affect the output.

Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, March 16, 2016 3:49:31 PM Subject: Re: [Freesurfer] FreeSurfer 6.0

yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?

On Wed, 16 Mar 2016, Alan Francis wrote:

...
Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
         Hi Elizabeth:

         I ran the Hippocampal subfields on 6.0 beta. The
         parcellation looks great.
         Beta is available for download. Here is the URL:

         https://surfer.nmr.mgh.harvard.edu/fswiki/Download

         best,

         Alan

         On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul
         <elisabeth.paul@student.uva.nl> wrote:
               Dear ladies and gentlemen,

         for a research project I need to measure the volume
         of the different
         hippocampus subregions. I want to use FreeSurfer 6.0
         for that but I
         can only find FreeSurfer 5.3 online. Is FreeSurfer
         6.0 not yet
         released and if so, when will it be released? If it
         is already
         released, could you tell me where to find it?

         Thank you very much in advance.

         Kind regards,

         Elisabeth Paul

         _______________________________________________
         Freesurfer mailing list
         Freesurfer@nmr.mgh.harvard.edu
         https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


         The information in this e-mail is intended only for
         the person to whom
         it is
         addressed. If you believe this e-mail was sent to
         you in error and the
         e-mail
         contains patient information, please contact the
         Partners Compliance
         HelpLine at
         http://www.partners.org/complianceline . If the
         e-mail was sent to you
         in error
         but does not contain patient information, please
         contact the sender
         and properly
         dispose of the e-mail.




         --
         |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

         Alan N. Francis PhD
         NIDA T32  Fellow in Computational Neuroscience
         Brain Imaging Center
         McLean Hospital
         Harvard Medical School
         115 Mill Street, Belmont, MA 02478
         alanf@bwh.harvard.edu
         afrancis@mclean.harvard.edu



         |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu

|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Martin Reuter, PhD Assistant Professor of Radiology, Harvard Medical School Assistant Professor of Neurology, Harvard Medical School A.A.Martinos Center for Biomedical Imaging Massachusetts General Hospital Research Affiliate, CSAIL, MIT Phone: +1-617-724-5652 Web : http://reuter.mit.edu

Bruce Fischl

11:37 a.m.

that's a good point On Wed, 16 Mar 2016, Martin Reuter wrote:

...

Although it should be mentioned that outputs (even of subfields) are going to change due to differences in the regular freesurfer processing, as the subfields stream builds upon the regular FS stream.

Best, Martin

On 03/16/2016 10:52 AM, Eugenio Iglesias wrote:

...
I only changed some details (e.g., temporary directories) that do not affect the output.

Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, March 16, 2016 3:49:31 PM Subject: Re: [Freesurfer] FreeSurfer 6.0

yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?

On Wed, 16 Mar 2016, Alan Francis wrote:

...
Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
         Hi Elizabeth:

         I ran the Hippocampal subfields on 6.0 beta. The
         parcellation looks great.
         Beta is available for download. Here is the URL:

         https://surfer.nmr.mgh.harvard.edu/fswiki/Download

         best,

         Alan

         On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul
         <elisabeth.paul@student.uva.nl> wrote:
               Dear ladies and gentlemen,

         for a research project I need to measure the volume
         of the different
         hippocampus subregions. I want to use FreeSurfer 6.0
         for that but I
         can only find FreeSurfer 5.3 online. Is FreeSurfer
         6.0 not yet
         released and if so, when will it be released? If it
         is already
         released, could you tell me where to find it?

         Thank you very much in advance.

         Kind regards,

         Elisabeth Paul

         _______________________________________________
         Freesurfer mailing list
         Freesurfer@nmr.mgh.harvard.edu
         https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


         The information in this e-mail is intended only for
         the person to whom
         it is
         addressed. If you believe this e-mail was sent to
         you in error and the
         e-mail
         contains patient information, please contact the
         Partners Compliance
         HelpLine at
         http://www.partners.org/complianceline . If the
         e-mail was sent to you
         in error
         but does not contain patient information, please
         contact the sender
         and properly
         dispose of the e-mail.




         --
         |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

         Alan N. Francis PhD
         NIDA T32  Fellow in Computational Neuroscience
         Brain Imaging Center
         McLean Hospital
         Harvard Medical School
         115 Mill Street, Belmont, MA 02478
         alanf@bwh.harvard.edu
         afrancis@mclean.harvard.edu



         |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|

Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu

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Alan Francis

17 Mar 17 Mar

11:43 a.m.

Thanks for that.

On Wed, Mar 16, 2016 at 11:37 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

...

that's a good point On Wed, 16 Mar 2016, Martin Reuter wrote:

...
Although it should be mentioned that outputs (even of subfields) are going to change due to differences in the regular freesurfer processing, as the subfields stream builds upon the regular FS stream.

Best, Martin

On 03/16/2016 10:52 AM, Eugenio Iglesias wrote:

...
I only changed some details (e.g., temporary directories) that do not

affect the output.

...
...
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, March 16, 2016 3:49:31 PM Subject: Re: [Freesurfer] FreeSurfer 6.0

yes, although the hippocampal stuff hasn't changed I don't think (Eugenio: is that correct)?

On Wed, 16 Mar 2016, Alan Francis wrote:

...
Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago

and

...
...
...
ran the HSF method successfully. Have they retracted that version?

best,

Alan

On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl <

fischl@nmr.mgh.harvard.edu>

...
...
...
wrote: actually there is no beta yet, but hopefully within a week or so On Wed, 16 Mar 2016, Alan Francis wrote:
         Hi Elizabeth:

         I ran the Hippocampal subfields on 6.0 beta. The
         parcellation looks great.
         Beta is available for download. Here is the URL:

         https://surfer.nmr.mgh.harvard.edu/fswiki/Download

         best,

         Alan

         On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul
         <elisabeth.paul@student.uva.nl> wrote:
               Dear ladies and gentlemen,

         for a research project I need to measure the volume
         of the different
         hippocampus subregions. I want to use FreeSurfer 6.0
         for that but I
         can only find FreeSurfer 5.3 online. Is FreeSurfer
         6.0 not yet
         released and if so, when will it be released? If it
         is already
         released, could you tell me where to find it?

         Thank you very much in advance.

         Kind regards,

         Elisabeth Paul

         _______________________________________________
         Freesurfer mailing list
         Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

...
...
...
         The information in this e-mail is intended only for
         the person to whom
         it is
         addressed. If you believe this e-mail was sent to
         you in error and the
         e-mail
         contains patient information, please contact the
         Partners Compliance
         HelpLine at
         http://www.partners.org/complianceline . If the
         e-mail was sent to you
         in error
         but does not contain patient information, please
         contact the sender
         and properly
         dispose of the e-mail.




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...
...
...
         Alan N. Francis PhD
         NIDA T32  Fellow in Computational Neuroscience
         Brain Imaging Center
         McLean Hospital
         Harvard Medical School
         115 Mill Street, Belmont, MA 02478
         alanf@bwh.harvard.edu
         afrancis@mclean.harvard.edu
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...
...
...

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Alan N. Francis PhD NIDA T32 Fellow in Computational Neuroscience Brain Imaging Center McLean Hospital Harvard Medical School 115 Mill Street, Belmont, MA 02478 alanf@bwh.harvard.edu afrancis@mclean.harvard.edu

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The information in this e-mail is intended only for the person to whom

it is

...
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addressed. If you believe this e-mail was sent to you in error and the

e-mail

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contains patient information, please contact the Partners Compliance

HelpLine at

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http://www.partners.org/complianceline . If the e-mail was sent to you

in error

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but does not contain patient information, please contact the sender and

properly

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dispose of the e-mail.

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Bruce Fischl

16 Mar 16 Mar

10:47 a.m.

Hi Elisabeth

we don't have an exact date yet, but have finished our code modifications (hopefully!) and are in the process of freezing a version after which we will run a set of tests and hopefully release it

cheers Bruce

On Wed, 16 Mar 2016, Elisabeth Paul wrote:

...

Dear ladies and gentlemen,

for a research project I need to measure the volume of the different hippocampus subregions. I want to use FreeSurfer 6.0 for that but I can only find FreeSurfer 5.3 online. Is FreeSurfer 6.0 not yet released and if so, when will it be released? If it is already released, could you tell me where to find it?

Thank you very much in advance.

Kind regards,

Elisabeth Paul

3743

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9 comments

5 participants

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participants (5)

Alan Francis
Bruce Fischl
Elisabeth Paul
Eugenio Iglesias
Martin Reuter