19 Mar
2024
19 Mar
'24
10:17 p.m.
External Email - Use Caution
Hello FreeSurfer Developers, When attempting to run "recon-all -long" in subjects with multiple T1 inputs, I get the following error when "longmc" is run:
concatLtas: Undefined variable. if: Expression Syntax. Command exited with non-zero status 1
For the entire log, see attached "longmc_error.log".
The following change at line 188 of "freesurfer/bin/longmc" fixes it (case-sensitive issue in "$concatLtas"):
set ud = `UpdateNeeded $origvol $CrossList $concatLtas --> set ud = `UpdateNeeded $origvol $CrossList $ConcatLtas`
Best,
Andrea