Re: [Freesurfer] mni is already installed

thank you so much. There is only one version for my Linux version 4:5.12.3-141 and recon-all ran w/o error now. so my next step is to figure out to view the results.

thanks again for guiding me thru this.

Pom

On Fri, Feb 25, 2011 at 11:03 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu

wrote:

yes, if you don't have perl, then it will fail. I don't know which version of perl you need. I run with v5.8.8, but the mni tools are pretty old, so I bet an older version of perl will work.

doug

Pom Sailasuta wrote:

...

[Pom@pom-PC bin]$ which nu_correct /usr/local/freesurfer/mni/bin/nu_correct

I found from mailing list archive that nu_correct needs perl, I am going to install perl on my desktop but can you please tell me if perl version perl-5.12.2 is o.k.

thanks Pom

On Fri, Feb 25, 2011 at 10:42 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

what happens when you type 'which nu_correct' ? doug

Pom Sailasuta wrote:

   Hi Dr. Greve,

   mni is already installed, (came with freesurfer software) in
   /usr/local/freesurfer/mni.

   thank you
   --         Pom

---

   _______________________________________________
   Freesurfer mailing list
   Freesurfer@nmr.mgh.harvard.edu
   <mailto:Freesurfer@nmr.mgh.harvard.edu>

   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu

Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

-- Pom

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html