Maybe it is running out of memory? Can you try it reducing the number of inputs?
On 6/29/2022 2:42 PM, Benjamin Deck wrote:
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Hi there,
I am attempting to concat a number of volume files that are filled cortical ribbons from a series of label files.
My workflow is to take the following steps: *Convert overlay file to label file* mri_vol2label --i ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.mgh \ --id 1 \ --l ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.label \ --surf ${sub} ${hemi} white \ --dilate 2 mri_label2label --srclabel ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.label \ --s ${sub} \ --hemi ${hemi} \ --trglabel /${subDir}/${sub}/label/li2019/${hemi}.${netMaskName}_native.label \ --regmethod surface *Convert label to volume
mri_label2vol --label /${subDir}/${sub}/label/li2019/${hemi}.${netMaskName}_native.label \ --identity \ --fill-ribbon \ --subject ${sub} \ --hemi ${hemi} \ --o /${subDir}/${sub}/mri/li2019_vols/${hemi}.${netMaskName}_native.mgz
*Finally concatenate the vols together*
mri_concat --f rois.txt --o yeo2011_nat.mgz --sum ninputs = 104 Checking inputs nframestot = 104 Allocing output Done allocing Killed
Not sure why this is being killed.
OS: WSL2 Ubuntu FS version: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
Thanks for your help!
-- *Benjamin L. Deck* /Doctoral Student/ /Applied Cognitive and Brain Sciences/ /Department of Psychological and Brain Sciences/ /Drexel University/
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