Re: [Freesurfer] CSF mask generation

FreeSurfer does not segment extracerebral CSF. You can use samseg (samseg --i orig.mgz --o samseg) and look at  the samseg/seg.mgz file

On 12/13/2022 1:46 AM, priya padma wrote:

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Dear Team,

I have tried creating binary CSF mask from # CSF: # - 4: Left-Lateral-Ventricle # - 14: 3rd-Ventricle # - 43: Right-Lateral-Ventricle but I would like to know whether is it possible for us to get outer CSF similar to fastsurfer. Any help would be highly appreciated. Thank you. -- Best Regards Padma Priya /AI Developer / / / /PhenoMx, Inc./ /priya@phenomx.ai | (+82)10-5405-2685/ / /

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