Dear Freesurfer Experts,
In qdec for question: "Does the average thickness differ between X and Y" we received blue colored regions, meaning that thickness for group Y is lower then X ?
We created ROIs for each region, and extracted cortical thickness for each ROI for each subject using mris_anatomical_stats.
in results: for each ROI, mean cortical thickness of Y group are higher then X.
is it a mistake, or the question was misunderstood ?
Sincerely, Alex.